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@blekhmanlab

Blekhman Lab

Microbiome research at the University of Chicago

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  1. rxivist rxivist Public archive

    API providing access to papers and authors scraped from biorxiv.org

    Python 58 11

  2. host_gene_microbiome_interactions host_gene_microbiome_interactions Public

    Analysis framework for integrating gut microbiome and host gene expression data

    R 31 11

  3. biomehorizon biomehorizon Public

    Plot microbiome time series in parallel

    R 23 2

  4. hominid hominid Public

    Hominid: host-microbiome interaction identification

    Python 15 3

  5. rxivist_web rxivist_web Public archive

    Web application for Rxivist, the site that makes it easier to find the most talked-about papers on bioRxiv.org

    Smarty 11 4

  6. panlingua panlingua Public archive

    Multilingual preprint search tool for bioRxiv

    Python 1

Repositories

Showing 10 of 17 repositories
  • compendium Public

    Metadata ingest service

    blekhmanlab/compendium’s past year of commit activity
    Python 0 Apache-2.0 1 11 0 Updated Sep 13, 2024
  • compendium_v1 Public

    Code associated with the first publication describing the Human Microbiome Compendium

    blekhmanlab/compendium_v1’s past year of commit activity
    R 0 0 0 0 Updated Sep 9, 2024
  • hominid Public

    Hominid: host-microbiome interaction identification

    blekhmanlab/hominid’s past year of commit activity
    Python 15 MIT 3 2 1 Updated Jun 17, 2024
  • milk_infant_microbiome Public

    Project on breast milk and infant gut microbiome

    blekhmanlab/milk_infant_microbiome’s past year of commit activity
    0 GPL-3.0 1 0 0 Updated Jan 25, 2024
  • compendium_website Public

    Website for the Human Microbiome Compendium

    blekhmanlab/compendium_website’s past year of commit activity
    TypeScript 0 1 0 0 Updated Jan 8, 2024
  • compendium_private Public Forked from blekhmanlab/compendium

    The version of the compendium management software used specifically by the Blekhman Lab

    blekhmanlab/compendium_private’s past year of commit activity
    Python 0 1 0 0 Updated Dec 13, 2023
  • snakemake-template Public template

    Quickstart for building out a new snakemake pipeline

    blekhmanlab/snakemake-template’s past year of commit activity
    Python 0 0 1 0 Updated Nov 16, 2023
  • biomehorizon Public

    Plot microbiome time series in parallel

    blekhmanlab/biomehorizon’s past year of commit activity
    R 23 2 5 0 Updated Nov 7, 2023
  • biorxiv_countries Public

    Code repository for "International authorship and collaboration in bioRxiv preprints"

    blekhmanlab/biorxiv_countries’s past year of commit activity
    TSQL 0 AGPL-3.0 1 0 1 Updated May 22, 2023
  • rxivist_web Public archive

    Web application for Rxivist, the site that makes it easier to find the most talked-about papers on bioRxiv.org

    blekhmanlab/rxivist_web’s past year of commit activity
    Smarty 11 AGPL-3.0 4 14 (3 issues need help) 0 Updated Mar 1, 2023
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